2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: 2-thiocytidine tRNA biosynthesis protein, TtcA
Primary source: TAIR:AT1G76170
Locus tag: AT1G76170
See related: Araport:AT1G76170
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T23E18.11; T23E18_11
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 9

Sequence:: Chromosome: 1; NC_003070.9 (28583850..28586418, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_106266.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables tRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in tRNA thio-modification	IEA Inferred from Electronic Annotation more info
involved_in tRNA wobble uridine modification	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: 2-thiocytidine tRNA biosynthesis protein, TtcA

NP_177744.2

2-thiocytidine tRNA biosynthesis protein, TtcA; FUNCTIONS IN: ATP binding; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Uncharacterised protein family UPF0021, C-terminal (InterPro:IPR000541), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: repressor of lrx1 (TAIR:AT2G44270.1); Has 4635 Blast hits to 4558 proteins in 1674 species: Archae - 313; Bacteria - 3429; Metazoa - 162; Fungi - 209; Plants - 60; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

28583850..28586418 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001334712.1 → NP_001321963.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDA6, A0A1P8ASH3
NM_001334711.1 → NP_001321959.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDA6, A0A1P8ASH8
NM_001334713.1 → NP_001321958.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDA6, A0A1P8ASH3
NM_001334714.1 → NP_001321960.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WDA6, A0A1P8ASH3
NM_001334715.1 → NP_001321962.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WBJ9, A0A1P8ASM8
NM_001334716.1 → NP_001321961.1 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8ASI0, A0A7G2E5C9
NM_106266.2 → NP_177744.2 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_177744.2

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9WUS5, F4I2A4

Conserved Domains (3) summary

TIGR00269
Location:189 → 290

TIGR00269; TIGR00269 family protein

COG0037
Location:15 → 292

TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]

cd01993
Location:39 → 225

Alpha_ANH_like_II; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...