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    LAC3 laccase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817571, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LAC3
    Official Full Name
    laccase 3
    Primary source
    TAIR:AT2G30210
    Locus tag
    AT2G30210
    See related
    Araport:AT2G30210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    laccase 3; T9D9.2
    Summary
    putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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    Genomic context

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    See LAC3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (12887446..12889931, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene EMBRYO DEFECTIVE 3147 Neighboring gene GDSL-like Lipase/Acylhydrolase family protein Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis. Zhuang Y, et al. Proc Natl Acad Sci U S A, 2020 Jul 7. PMID 32571955, Free PMC Article
    2. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification. Rojas-Murcia N, et al. Proc Natl Acad Sci U S A, 2020 Nov 17. PMID 33139576, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis.
      Title: Laccase3-based extracellular domain provides possible positional information for directing Casparian strip formation in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_128574.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydroquinone:oxygen oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Casparian strip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    laccase 3
    NP_180580.1
    • laccase 3 (LAC3); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: hypocotyl, fruit, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 13 (TAIR:AT5G07130.1); Has 11124 Blast hits to 9161 proteins in 1586 species: Archae - 42; Bacteria - 5039; Metazoa - 506; Fungi - 3547; Plants - 1577; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12887446..12889931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128574.4 → NP_180580.1  laccase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180580.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22917, Q56YT0
      UniProtKB/TrEMBL
      A0A178W2Q1, A0A5S9X2S3, A0A654EXF1
      Conserved Domains (1) summary
      TIGR03389
      Location:25 → 570
      laccase; plant
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q56YT0.2

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