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    PEX11C peroxin 11c [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839257, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PEX11C
    Official Full Name
    peroxin 11c
    Primary source
    TAIR:AT1G01820
    Locus tag
    AT1G01820
    See related
    Araport:AT1G01820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    peroxin 11c; T1N6.24; T1N6_24
    Summary
    member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
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    Genomic context

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    See PEX11C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (296001..298334, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene uncharacterized protein Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene AP2-like ethylene-responsive transcription factor SNZ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PEROXIN11c-e, FISSION1b, and DYNAMIN-RELATED PROTEIN3A cooperate in cell cycle-associated replication of peroxisomes. Lingard MJ, et al. Plant Cell, 2008 Jun. PMID 18539750, Free PMC Article
    2. The Arabidopsis chloroplast division protein DYNAMIN-RELATED PROTEIN5B also mediates peroxisome division. Zhang X, et al. Plant Cell, 2010 Feb. PMID 20179140, Free PMC Article
    3. The PEROXIN11 protein family controls peroxisome proliferation in Arabidopsis. Orth T, et al. Plant Cell, 2007 Jan. PMID 17220199, Free PMC Article
    4. Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants. Nito K, et al. Plant Cell Physiol, 2007 Jun. PMID 17478547
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100065.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within peroxisome fission IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within peroxisome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region HDA PubMed 
    located_in peroxisomal membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    peroxin 11c
    NP_563636.1
    • peroxin 11c (PEX11C); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3); Has 289 Blast hits to 289 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 41; Plants - 179; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      296001..298334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100065.5 → NP_563636.1  peroxin 11c [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563636.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5QT12, Q9LQ73
      UniProtKB/TrEMBL
      A0A178W4K0, A0A5S9S4F9
      Conserved Domains (1) summary
      pfam05648
      Location:11 → 226
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQ73.1

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