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    AT59 Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838004, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AT59
    Official Full Name
    Pectate lyase family protein
    Primary source
    TAIR:AT1G14420
    Locus tag
    AT1G14420
    See related
    Araport:AT1G14420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.19; F14L17_19
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    Genomic context

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    See AT59 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (4931485..4933662, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ubiquitin carrier protein 1 Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene glyoxal oxidase-related protein Neighboring gene homeobox protein 31

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of the tobacco and Arabidopsis homologues of the pollen-expressed LAT59 gene of tomato. Kulikauskas R, et al. Plant Mol Biol, 1997 Jul. PMID 9278171
    2. Pectate lyase-like lubricates the male gametophyte's path toward its mating partner. Chebli Y, et al. Plant Physiol, 2023 Dec 30. PMID 37658849
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101309.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pectate lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall organization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectate lyase family protein
    NP_172894.1
    • AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT2G02720.1); Has 1736 Blast hits to 1725 proteins in 285 species: Archae - 2; Bacteria - 722; Metazoa - 0; Fungi - 281; Plants - 703; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4931485..4933662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101309.5 → NP_172894.1  Pectate lyase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23665, Q9M9S2
      UniProtKB/TrEMBL
      A0A178W0I9, A0A5S9UFR3, A0A654EBD6, Q680M0
      Conserved Domains (2) summary
      smart00656
      Location:180 → 374
      Amb_all; Amb_all domain
      pfam04431
      Location:31 → 85
      Pec_lyase_N; Pectate lyase, N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M9S2.1

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