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    TRM12 hypothetical protein (DUF3741) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842671, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM12
    Official Full Name
    hypothetical protein (DUF3741)
    Primary source
    TAIR:AT1G63670
    Locus tag
    AT1G63670
    See related
    Araport:AT1G63670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24D7.14; F24D7_14; TON1 Recruiting Motif 12
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    Genomic context

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    See TRM12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (23607357..23610779, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase Neighboring gene ALBINO OR PALE-GREEN 13 Neighboring gene SIGNAL PEPTIDE PEPTIDASE-LIKE 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084297.2
    NM_001084298.2
    NM_001334118.1
    NM_001334119.1
    NM_105044.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF3741)
    NP_001077766.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 703 Blast hits to 632 proteins in 148 species: Archae - 5; Bacteria - 69; Metazoa - 168; Fungi - 50; Plants - 149; Viruses - 4; Other Eukaryotes - 258 (source: NCBI BLink).
    NP_001077767.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 703 Blast hits to 632 proteins in 148 species: Archae - 5; Bacteria - 69; Metazoa - 168; Fungi - 50; Plants - 149; Viruses - 4; Other Eukaryotes - 258 (source: NCBI BLink).
    NP_176554.1
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 703 Blast hits to 632 proteins in 148 species: Archae - 5; Bacteria - 69; Metazoa - 168; Fungi - 50; Plants - 149; Viruses - 4; Other Eukaryotes - 258 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23607357..23610779 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084298.2 → NP_001077767.1  hypothetical protein (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077767.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4N1, Q9CAD2
      Conserved Domains (2) summary
      pfam12552
      Location:199 → 226
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:527 → 672
      DUF4378; Domain of unknown function (DUF4378)

    2. NM_001084297.2 → NP_001077766.1  hypothetical protein (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077766.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4N1, Q9CAD2
      Conserved Domains (2) summary
      pfam12552
      Location:199 → 226
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:527 → 672
      DUF4378; Domain of unknown function (DUF4378)

    3. NM_105044.4 → NP_176554.1  hypothetical protein (DUF3741) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176554.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4N1, Q9CAD2
      Conserved Domains (2) summary
      pfam12552
      Location:199 → 226
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:527 → 672
      DUF4378; Domain of unknown function (DUF4378)

    4. NM_001334118.1 → NP_001320654.1  hypothetical protein (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4N1, Q9CAD2

    5. NM_001334119.1 → NP_001320655.1  hypothetical protein (DUF3741) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANH4
    Nucleotide Protein
    Heading Accession and Version

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