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    WRKY58 WRKY DNA-binding protein 58 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821213, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY58
    Official Full Name
    WRKY DNA-binding protein 58
    Primary source
    TAIR:AT3G01080
    Locus tag
    AT3G01080
    See related
    Araport:AT3G01080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATWRKY58; T4P13.24; T4P13_24; WRKY DNA-binding protein 58; WRKY DNA-BINDING PROTEIN 58
    Summary
    member of WRKY Transcription Factor; Group I
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    Genomic context

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    See WRKY58 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (25355..27712)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lysine-tRNA ligase Neighboring gene early nodulin-like protein 16 Neighboring gene Protein kinase superfamily protein Neighboring gene SNF1 kinase homolog 10 Neighboring gene hypothetical protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. Wang D, et al. PLoS Pathog, 2006 Nov. PMID 17096590, Free PMC Article
    2. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_110973.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 58
    NP_186757.2
    • WRKY DNA-binding protein 58 (WRKY58); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5867 Blast hits to 3142 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 6; Plants - 5775; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      25355..27712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337310.1 → NP_001325618.1  WRKY DNA-binding protein 58 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLS8, A0A5S9X831, A0A654F304, A0A7G2EH79
      Conserved Domains (1) summary
      smart00774
      Location:343 → 400
      WRKY; DNA binding domain

    2. NM_001337311.1 → NP_001325619.1  WRKY DNA-binding protein 58 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLS9

    3. NM_110973.3 → NP_186757.2  WRKY DNA-binding protein 58 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186757.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93WU7, Q9MAC2
      UniProtKB/TrEMBL
      A0A654F304, A0A7G2EH79
      Conserved Domains (1) summary
      smart00774
      Location:305 → 362
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93WU7.2

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