U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HYP1 hypothetical protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821205, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    HYP1
    Official Full Name
    hypothetical protein 1
    Primary source
    TAIR:AT3G01100
    Locus tag
    AT3G01100
    See related
    Araport:AT3G01100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1; AT3G01110; ATHYP1; hypothetical protein 1; T4P13.21; T4P13_21
    Summary
    unknown protein, has cDNAs and ESTs associated to it
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HYP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (34658..38660, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 58 Neighboring gene Protein kinase superfamily protein Neighboring gene SNF1 kinase homolog 10 Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene ATP synthase E chain

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. OSCA/TMEM63 are an Evolutionarily Conserved Family of Mechanically Activated Ion Channels. Murthy SE, et al. Elife, 2018 Nov 1. PMID 30382938, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001035536.3
    NM_001337314.1
    NM_001337315.1
    NM_110975.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mechanosensitive monoatomic ion channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein 1
    NP_001030613.1
    • hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_186759.2
    • hypothetical protein 1 (HYP1); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: Early-responsive to dehydration stress protein (ERD4) (TAIR:AT1G69450.2); Has 1409 Blast hits to 1276 proteins in 193 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 674; Plants - 429; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      34658..38660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_110975.5 → NP_186759.2  hypothetical protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186759.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q39075, Q39126, Q56YE2, Q8GUH7
      UniProtKB/TrEMBL
      A0A097NUP6, A0A178VAY8
      Conserved Domains (4) summary
      COG5594
      Location:2 → 694
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:304 → 621
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:5 → 167
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:225 → 286
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    2. NM_001035536.3 → NP_001030613.1  hypothetical protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030613.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY8, F4J116
      Conserved Domains (3) summary
      pfam02714
      Location:304 → 583
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:5 → 167
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:225 → 286
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter

    3. NM_001337314.1 → NP_001327194.1  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAY8, A0A1I9LRJ9

    4. NM_001337315.1 → NP_001327195.1  hypothetical protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRK0, A0A5S9X813
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUH7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.