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    LSH2 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819607, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LSH2
    Official Full Name
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    Primary source
    TAIR:AT3G04510
    Locus tag
    AT3G04510
    See related
    Araport:AT3G04510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LIGHT SENSITIVE HYPOCOTYLS 2; T27C4.16; T27C4_16
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    Genomic context

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    See LSH2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (1215633..1216958, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene exportin-4 protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene threonine aldolase 2 Neighboring gene tRNA-Arg

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes. Lee M, et al. Genes Genomics, 2020 Oct. PMID 32803702
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.
      Title: Molecular characterization of Arabidopsis thaliana LSH1 and LSH2 genes.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_111322.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in post-embryonic plant morphogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
    NP_187101.1
    • LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G28490.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1215633..1216958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111322.3 → NP_187101.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187101.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M836
      UniProtKB/TrEMBL
      A0A178VF60, A0A5S9X902
      Conserved Domains (1) summary
      pfam04852
      Location:33 → 146
      DUF640; Protein of unknown function (DUF640)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M836.1

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