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    Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819862, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectin lyase-like superfamily protein
    Primary source
    TAIR:AT3G06770
    Locus tag
    AT3G06770
    See related
    Araport:AT3G06770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2134773..2137641, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Drought-responsive family protein Neighboring gene miscRNA Neighboring gene Chaperone DnaJ-domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337676.1
    NM_001337677.1
    NM_111557.2
    NM_180194.3
    NM_180195.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectin lyase-like superfamily protein
    NP_566292.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7; Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
    NP_850525.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.2); Has 3304 Blast hits to 3296 proteins in 440 species: Archae - 6; Bacteria - 1354; Metazoa - 7; Fungi - 623; Plants - 1207; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).
    NP_850526.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7; Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2134773..2137641 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180194.3 → NP_850525.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850525.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEE1, A0A384L8B6, A0A5S9X9T2, Q8RWK6
      Conserved Domains (1) summary
      COG5434
      Location:43 → 355
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    2. NM_180195.2 → NP_850526.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850526.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LAH2, Q9M7Y3
      Conserved Domains (1) summary
      COG5434
      Location:4 → 286
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    3. NM_001337676.1 → NP_001326102.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEB5, A0A1I9LN93, A0A384LCL6, Q8LAH2
      Conserved Domains (1) summary
      COG5434
      Location:37 → 268
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

    4. NM_001337677.1 → NP_001326103.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN94, A0A5S9X9T2

    5. NM_111557.2 → NP_566292.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566292.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LAH2, Q9M7Y3
      Conserved Domains (1) summary
      COG5434
      Location:4 → 286
      Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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