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    PUB25 plant U-box 25 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821472, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUB25
    Official Full Name
    plant U-box 25
    Primary source
    TAIR:AT3G19380
    Locus tag
    AT3G19380
    See related
    Araport:AT3G19380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plant U-box 25
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    Genomic context

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    See PUB25 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6714133..6716178, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Zinc finger (CCCH-type) family protein Neighboring gene filament-like protein (DUF869) Neighboring gene Granulin repeat cysteine protease family protein Neighboring gene Cysteine proteinases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Verticillium dahliae effector VDAL protects MYB6 from degradation by interacting with PUB25 and PUB26 E3 ligases to enhance Verticillium wilt resistance. Ma A, et al. Plant Cell, 2021 Dec 3. PMID 34469582, Free PMC Article
    2. Plant U-box E3 ligases PUB25 and PUB26 control organ growth in Arabidopsis. Li J, et al. New Phytol, 2021 Jan. PMID 32810874
    3. A Regulatory Module Controlling Homeostasis of a Plant Immune Kinase. Wang J, et al. Mol Cell, 2018 Feb 1. PMID 29358080
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Verticillium dahliae effector VDAL protects MYB6 from degradation by interacting with PUB25 and PUB26 E3 ligases to enhance Verticillium wilt resistance.
      Title: Verticillium dahliae effector VDAL protects MYB6 from degradation by interacting with PUB25 and PUB26 E3 ligases to enhance Verticillium wilt resistance.
    2. Plant U-box E3 ligases PUB25 and PUB26 control organ growth in Arabidopsis.
      Title: Plant U-box E3 ligases PUB25 and PUB26 control organ growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_112825.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to other organism IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to other organism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    plant U-box 25
    NP_566632.1
    • plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6714133..6716178 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112825.4 → NP_566632.1  plant U-box 25 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566632.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMA7, Q9LT79
      UniProtKB/TrEMBL
      A0A178VQ48, A0A5S9XE86
      Conserved Domains (1) summary
      smart00504
      Location:17 → 81
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT79.1

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