CMPG1 CYS, MET, PRO, and GLY protein 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: CMPG1
Official Full Name: CYS, MET, PRO, and GLY protein 1
Primary source: TAIR:AT1G66160
Locus tag: AT1G66160
See related: Araport:AT1G66160
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ''CYS; and GLY protein 1; and GLY protein 1''; ATCMPG1; CYS; F15E12.6; F15E12_6; MET; PRO
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Genomic context

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See CMPG1 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 1

Sequence:: Chromosome: 1; NC_003070.9 (24637196..24638608)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_105287.2

Supported by ESTs:

NM_179516.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: CYS, MET, PRO, and GLY protein 1

NP_564866.1

''CYS, MET, PRO, and GLY protein 1'' (CMPG1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 2372 Blast hits to 2357 proteins in 158 species: Archae - 0; Bacteria - 16; Metazoa - 212; Fungi - 52; Plants - 1883; Viruses - 3; Other Eukaryotes - 206 (source: NCBI BLink).

NP_849847.1

''CYS, MET, PRO, and GLY protein 1'' (CMPG1); FUNCTIONS IN: binding; INVOLVED IN: response to chitin; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 1454 Blast hits to 1441 proteins in 68 species: Archae - 0; Bacteria - 10; Metazoa - 52; Fungi - 8; Plants - 1378; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

24637196..24638608

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_105287.2 → NP_564866.1 CYS, MET, PRO, and GLY protein 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_564866.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8LB50, Q9C8D1

UniProtKB/TrEMBL

A0A178WD99

Conserved Domains (1) summary

smart00504
Location:37 → 99

Ubox; Modified RING finger domain
NM_179516.1 → NP_849847.1 CYS, MET, PRO, and GLY protein 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_849847.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WD99, F4ID86

Conserved Domains (1) summary

cl17238
Location:33 → 83

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...