U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    UBP24 ubiquitin-specific protease 24 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829213, updated on 18-Sep-2024

    Summary

    Official Symbol
    UBP24
    Official Full Name
    ubiquitin-specific protease 24
    Primary source
    TAIR:AT4G30890
    Locus tag
    AT4G30890
    See related
    Araport:AT4G30890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6I18.200; F6I18_200; ubiquitin-specific protease 24
    Summary
    Encodes a ubiquitin-specific protease.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See UBP24 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (15036020..15039417, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene Cytosol aminopeptidase family protein Neighboring gene Cytosol aminopeptidase family protein

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203946.1
    NM_202915.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    ubiquitin-specific protease 24
    NP_001190875.1
    • ubiquitin-specific protease 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 15 (TAIR:AT1G17110.2).
    NP_567860.1
    • ubiquitin-specific protease 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 15 (TAIR:AT1G17110.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974644.1
    • ubiquitin-specific protease 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 15 (TAIR:AT1G17110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15036020..15039417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119236.4NP_567860.1  ubiquitin-specific protease 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567860.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65560, Q8L7U2, Q9FPS3
      UniProtKB/TrEMBL
      A0A178US20, A0A5S9XXF1, A0A654FUE6, B9DGE6
      Conserved Domains (1) summary
      pfam00443
      Location:197548
      UCH; Ubiquitin carboxyl-terminal hydrolase
    2. NM_202915.2NP_974644.1  ubiquitin-specific protease 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974644.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65560, Q8L7U2, Q9FPS3
      UniProtKB/TrEMBL
      A0A178US20, A0A5S9XXF1, A0A654FUE6, B9DGE6
      Conserved Domains (1) summary
      pfam00443
      Location:197548
      UCH; Ubiquitin carboxyl-terminal hydrolase
    3. NM_001203946.1NP_001190875.1  ubiquitin-specific protease 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190875.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65560, Q8L7U2, Q9FPS3
      UniProtKB/TrEMBL
      A0A178US20, A0A5S9XXF1, A0A654FUE6, B9DGE6
      Conserved Domains (1) summary
      pfam00443
      Location:197548
      UCH; Ubiquitin carboxyl-terminal hydrolase