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    nuclear factor kappa-B-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831243, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nuclear factor kappa-B-binding protein
    Primary source
    TAIR:AT5G13950
    Locus tag
    AT5G13950
    See related
    Araport:AT5G13950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC12.8; MAC12_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (4495844..4500735, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene GRF zinc finger / Zinc knuckle protein Neighboring gene aminopeptidase Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene ncRNA Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein Neighboring gene midasin-like protein Neighboring gene Glycosyl hydrolase family 38 protein Neighboring gene exocyst subunit exo70 family protein C2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001085111.1
    NM_001203377.1
    NM_001343302.1
    NM_121398.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor kappa-B-binding protein
    NP_001078580.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    NP_001190306.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1).
    NP_196899.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4495844..4500735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121398.3 → NP_196899.2  nuclear factor kappa-B-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196899.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3X0, A0A654G0V4, F4K5E0, Q8GZ61

    2. NM_001343302.1 → NP_001331013.1  nuclear factor kappa-B-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3X0, A0A654G0V4, F4K5E0, Q8GZ61

    3. NM_001085111.1 → NP_001078580.1  nuclear factor kappa-B-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078580.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3X0, A0A654G0V4, F4K5E0, Q8GZ61

    4. NM_001203377.1 → NP_001190306.1  nuclear factor kappa-B-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190306.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3X0, F4K5E2, Q8GZ61
    Nucleotide Protein
    Heading Accession and Version

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