U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ENTH/VHS family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836642, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    ENTH/VHS family protein
    Primary source
    TAIR:AT5G65180
    Locus tag
    AT5G65180
    See related
    Araport:AT5G65180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQN23.12; MQN23_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (26045327..26048031)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase 2-3 Neighboring gene VQ motif-containing protein Neighboring gene plant U-box 38 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_125916.3
    NM_203267.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ENTH/VHS family protein
    NP_569007.1
    • ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT5G10060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974996.1
    • ENTH/VHS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT5G10060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26045327..26048031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_203267.2 → NP_974996.1  ENTH/VHS family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974996.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DHK1, F4KGJ9
      Conserved Domains (1) summary
      cl20817
      Location:50 → 156
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. NM_125916.3 → NP_569007.1  ENTH/VHS family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_569007.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAS8, A0A7G2FPU1, Q9FJP7
      Conserved Domains (2) summary
      PRK03918
      Location:197 → 288
      PRK03918; DNA double-strand break repair ATPase Rad50
      cd16981
      Location:7 → 130
      CID_RPRD_like; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools