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    folate-sensitive fragile site protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827162, updated on 18-Sep-2024

    Summary

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    Official Full Name
    folate-sensitive fragile site protein
    Primary source
    TAIR:AT4G15030
    Locus tag
    AT4G15030
    See related
    Araport:AT4G15030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3556W; FCAALL.175
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (8578741..8582247)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene hAT transposon superfamily Neighboring gene uncharacterized protein Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene NEP-interacting protein, putative (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160763.1
    NM_001340988.1
    NM_117590.7

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    folate-sensitive fragile site protein
    NP_001319942.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8498 Blast hits to 5699 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3838; Fungi - 743; Plants - 650; Viruses - 76; Other Eukaryotes - 2921 (source: NCBI BLink).
    NP_193239.5
    • CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8578741..8582247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117590.7 → NP_193239.5  folate-sensitive fragile site protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193239.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7X7, A0A5S9XSQ3, F4JJC4
      Conserved Domains (1) summary
      pfam09725
      Location:59 → 171
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1

    2. NM_001340988.1 → NP_001319942.1  folate-sensitive fragile site protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FPL7, F4JJC3

    3. NM_001160763.1 → NP_001154235.1  folate-sensitive fragile site protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154235.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FPL7, F4JJC3
      Conserved Domains (1) summary
      pfam09725
      Location:63 → 175
      Fra10Ac1; Folate-sensitive fragile site protein Fra10Ac1
    Nucleotide Protein
    Heading Accession and Version

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