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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001168468.2 → NP_001161940.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform 1
See identical proteins and their annotated locations for NP_001161940.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AB094096, AY047359, DA381610
- Consensus CDS
-
CCDS53719.1
- UniProtKB/TrEMBL
-
B4DPH0
- Related
- ENSP00000347742.5, ENST00000355547.10
- Conserved Domains (1) summary
-
- cd00992
Location:47 → 127
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_024791.4 → NP_079067.3 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform 2
See identical proteins and their annotated locations for NP_079067.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AB094096, AP002956, BC029042, DA381610
- Consensus CDS
-
CCDS8417.1
- UniProtKB/TrEMBL
- B0YJ61, B4DPH0
- Related
- ENSP00000327107.4, ENST00000322712.4
- Conserved Domains (1) summary
-
- cd00992
Location:47 → 127
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
RNA
-
NR_033122.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB094096, AK298333, AP002956
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
119185475..119190213
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011543002.3 → XP_011541304.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X1
See identical proteins and their annotated locations for XP_011541304.1
- UniProtKB/Swiss-Prot
- Q86UT5, Q8N6R4, Q8NAW7, Q8NEX7, Q9H5Z3
- UniProtKB/TrEMBL
-
B4DPH0
- Related
- ENSP00000431164.1, ENST00000531114.5
- Conserved Domains (2) summary
-
- smart00228
Location:326 → 411
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:113 → 193
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_011543001.3 → XP_011541303.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X1
See identical proteins and their annotated locations for XP_011541303.1
- UniProtKB/Swiss-Prot
- Q86UT5, Q8N6R4, Q8NAW7, Q8NEX7, Q9H5Z3
- UniProtKB/TrEMBL
-
B4DPH0
- Conserved Domains (2) summary
-
- smart00228
Location:326 → 411
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:113 → 193
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_011543005.3 → XP_011541307.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X3
- UniProtKB/TrEMBL
-
B4DPH0
- Related
-
ENST00000527028.5
- Conserved Domains (1) summary
-
- cd00992
Location:48 → 128
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_017018334.2 → XP_016873823.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X2
- UniProtKB/TrEMBL
-
B4DPH0
- Conserved Domains (2) summary
-
- smart00228
Location:312 → 397
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:113 → 193
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_047427615.1 → XP_047283571.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X4
- UniProtKB/TrEMBL
- B4DPH0, E9PPZ1
- Related
- ENSP00000434559.1, ENST00000525131.5
-
XM_017018335.2 → XP_016873824.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X5
- Conserved Domains (1) summary
-
- cd00992
Location:113 → 193
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_017018336.2 → XP_016873825.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X6
- Conserved Domains (1) summary
-
- cd00992
Location:113 → 193
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_017018337.2 → XP_016873826.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X7
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
119205845..119210583
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369993.1 → XP_054225968.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X1
- UniProtKB/Swiss-Prot
- Q86UT5, Q8N6R4, Q8NAW7, Q8NEX7, Q9H5Z3
- UniProtKB/TrEMBL
-
B4DPH0
-
XM_054369995.1 → XP_054225970.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X3
- UniProtKB/TrEMBL
-
B4DPH0
-
XM_054369994.1 → XP_054225969.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X2
- UniProtKB/TrEMBL
-
B4DPH0
-
XM_054369996.1 → XP_054225971.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X4
- UniProtKB/TrEMBL
- B4DPH0, E9PPZ1
-
XM_054369997.1 → XP_054225972.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X5
-
XM_054369998.1 → XP_054225973.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X6
-
XM_054369999.1 → XP_054225974.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF4 isoform X7