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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_013249.2 RefSeqGene
- Range
-
245495..833409
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001163278.2 → NP_001156750.1 teneurin-1 isoform 1 precursor
See identical proteins and their annotated locations for NP_001156750.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AL008707, AL022718, AL023878, AL031075, Z81008, Z83823, Z85995
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
- Related
- ENSP00000403954.4, ENST00000422452.4
- Conserved Domains (10) summary
-
- COG3209
Location:1825 → 2394
- RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
- cd05819
Location:1197 → 1236
- NHL; NHL repeat [structural motif]
- TIGR01643
Location:1852 → 1892
- YD_repeat_2x; YD repeat (two copies)
- TIGR03696
Location:2346 → 2424
- Rhs_assc_core; RHS repeat-associated core domain
- pfam01500
Location:529 → 732
- Keratin_B2; Keratin, high sulfur B2 protein
- pfam05593
Location:1644 → 1678
- RHS_repeat; RHS Repeat
- pfam06484
Location:23 → 317
- Ten_N; Teneurin Intracellular Region
- pfam07974
Location:532 → 558
- EGF_2; EGF-like domain
- pfam15636
Location:2650 → 2725
- Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
- cl18310
Location:1168 → 1528
- NHL; NHL repeat unit of beta-propeller proteins
-
NM_001163279.1 → NP_001156751.1 teneurin-1 isoform 2 precursor
See identical proteins and their annotated locations for NP_001156751.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame acceptor splice site at one of the coding exons compared to variant 1. This results in an isoform (2) that is 1 aa shorter than isoform 1.
- Source sequence(s)
-
AF100772, AI498402, AK055765, AL022718, BC030766, BC144543, BX478232, CF454574
- UniProtKB/TrEMBL
- A0A8Z5AZJ6, B7ZMH4
- Conserved Domains (10) summary
-
- COG3209
Location:1824 → 2393
- RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
- cd05819
Location:1196 → 1235
- NHL; NHL repeat [structural motif]
- TIGR01643
Location:1851 → 1891
- YD_repeat_2x; YD repeat (two copies)
- TIGR03696
Location:2345 → 2423
- Rhs_assc_core; RHS repeat-associated core domain
- pfam01500
Location:528 → 731
- Keratin_B2; Keratin, high sulfur B2 protein
- pfam05593
Location:1643 → 1677
- RHS_repeat; RHS Repeat
- pfam06484
Location:23 → 317
- Ten_N; Teneurin Intracellular Region
- pfam07974
Location:531 → 557
- EGF_2; EGF-like domain
- pfam15636
Location:2649 → 2724
- Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
- cl18310
Location:1167 → 1527
- NHL; NHL repeat unit of beta-propeller proteins
-
NM_014253.3 → NP_055068.2 teneurin-1 isoform 3 precursor
See identical proteins and their annotated locations for NP_055068.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (3) missing an internal 7 aa protein segment compared to isoform 1.
- Source sequence(s)
-
AF100772, AI498402, AK055765, AL022718, BC030766, BC140783, BX478232, CF454574
- Consensus CDS
-
CCDS14609.1
- UniProtKB/Swiss-Prot
- B2RTR5, Q5JZ17, Q9UKZ4
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
- Related
- ENSP00000360171.3, ENST00000371130.7
- Conserved Domains (10) summary
-
- COG3209
Location:1818 → 2387
- RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
- cd05819
Location:1241 → 1284
- NHL; NHL repeat [structural motif]
- TIGR01643
Location:1845 → 1885
- YD_repeat_2x; YD repeat (two copies)
- TIGR03696
Location:2339 → 2417
- Rhs_assc_core; RHS repeat-associated core domain
- pfam01500
Location:529 → 732
- Keratin_B2; Keratin, high sulfur B2 protein
- pfam05593
Location:1637 → 1671
- RHS_repeat; RHS Repeat
- pfam06484
Location:23 → 317
- Ten_N; Teneurin Intracellular Region
- pfam07974
Location:532 → 558
- EGF_2; EGF-like domain
- pfam15636
Location:2643 → 2718
- Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
- cl18310
Location:1168 → 1521
- NHL; NHL repeat unit of beta-propeller proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
124375903..125204312 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017029210.3 → XP_016884699.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_017029211.3 → XP_016884700.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_047441760.1 → XP_047297716.1 teneurin-1 isoform X3
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_017029214.3 → XP_016884703.1 teneurin-1 isoform X2
- UniProtKB/Swiss-Prot
- B2RTR5, Q5JZ17, Q9UKZ4
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
- Conserved Domains (10) summary
-
- COG3209
Location:1818 → 2387
- RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
- cd05819
Location:1241 → 1284
- NHL; NHL repeat [structural motif]
- TIGR01643
Location:1845 → 1885
- YD_repeat_2x; YD repeat (two copies)
- TIGR03696
Location:2339 → 2417
- Rhs_assc_core; RHS repeat-associated core domain
- pfam01500
Location:529 → 732
- Keratin_B2; Keratin, high sulfur B2 protein
- pfam05593
Location:1637 → 1671
- RHS_repeat; RHS Repeat
- pfam06484
Location:23 → 317
- Ten_N; Teneurin Intracellular Region
- pfam07974
Location:532 → 558
- EGF_2; EGF-like domain
- pfam15636
Location:2643 → 2718
- Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
- cl18310
Location:1168 → 1521
- NHL; NHL repeat unit of beta-propeller proteins
-
XM_017029208.3 → XP_016884697.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_017029209.3 → XP_016884698.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_047441759.1 → XP_047297715.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_017029213.3 → XP_016884702.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_011531236.4 → XP_011529538.2 teneurin-1 isoform X4
-
XM_047441762.1 → XP_047297718.1 teneurin-1 isoform X6
-
XM_047441761.1 → XP_047297717.1 teneurin-1 isoform X5
-
XM_011531237.3 → XP_011529539.1 teneurin-1 isoform X7
- Conserved Domains (7) summary
-
- COG3209
Location:493 → 1062
- RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
- cd05819
Location:39 → 78
- NHL; NHL repeat [structural motif]
- TIGR01643
Location:520 → 560
- YD_repeat_2x; YD repeat (two copies)
- TIGR03696
Location:1014 → 1092
- Rhs_assc_core; RHS repeat-associated core domain
- pfam05593
Location:312 → 346
- RHS_repeat; RHS Repeat
- pfam15636
Location:1318 → 1393
- Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
- cl18310
Location:2 → 196
- NHL; NHL repeat unit of beta-propeller proteins
-
XM_017029216.3 → XP_016884705.1 teneurin-1 isoform X9
-
XM_017029215.3 → XP_016884704.1 teneurin-1 isoform X8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
122686274..123514783 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326349.1 → XP_054182324.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326345.1 → XP_054182320.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326346.1 → XP_054182321.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326351.1 → XP_054182326.1 teneurin-1 isoform X3
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326350.1 → XP_054182325.1 teneurin-1 isoform X2
- UniProtKB/Swiss-Prot
- B2RTR5, Q5JZ17, Q9UKZ4
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326344.1 → XP_054182319.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326347.1 → XP_054182322.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326348.1 → XP_054182323.1 teneurin-1 isoform X1
- UniProtKB/TrEMBL
-
A0A8Z5AZJ6
-
XM_054326352.1 → XP_054182327.1 teneurin-1 isoform X4
-
XM_054326354.1 → XP_054182329.1 teneurin-1 isoform X6
-
XM_054326353.1 → XP_054182328.1 teneurin-1 isoform X5
-
XM_054326355.1 → XP_054182330.1 teneurin-1 isoform X7
-
XM_054326357.1 → XP_054182332.1 teneurin-1 isoform X9
-
XM_054326356.1 → XP_054182331.1 teneurin-1 isoform X8