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    Gm13580 predicted gene 13580 [ Mus musculus (house mouse) ]

    Gene ID: 100039176, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm13580provided by MGI
    Official Full Name
    predicted gene 13580provided by MGI
    Primary source
    MGI:MGI:3650460
    See related
    Ensembl:ENSMUSG00000087283 AllianceGenome:MGI:3650460
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in thymus adult (RPKM 1.3), placenta adult (RPKM 0.8) and 8 other tissues See more
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    Genomic context

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    See Gm13580 in Genome Data Viewer
    Location:
    2 C1.1; 2 34.64 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (60241869..60242918)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (60411525..60412574)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene CD302 antigen Neighboring gene ribosomal protein L10A, pseudogene 4 Neighboring gene lymphocyte antigen 75 Neighboring gene predicted gene 13571 Neighboring gene STARR-seq mESC enhancer starr_04613 Neighboring gene STARR-seq mESC enhancer starr_04614 Neighboring gene phospholipase A2 receptor 1 Neighboring gene STARR-seq mESC enhancer starr_04615 Neighboring gene predicted gene 13583 Neighboring gene TBC1 domain family, member 15 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046065.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC051520
      Related
      ENSMUST00000379474.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      60241869..60242918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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