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    BC024063 cDNA sequence BC024063 [ Mus musculus (house mouse) ]

    Gene ID: 666584, updated on 9-Dec-2024

    Summary

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    Official Symbol
    BC024063provided by MGI
    Official Full Name
    cDNA sequence BC024063provided by MGI
    Primary source
    MGI:MGI:2670978
    See related
    Ensembl:ENSMUSG00000112160 AllianceGenome:MGI:2670978
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E18 (RPKM 2.2), CNS E11.5 (RPKM 1.9) and 19 other tissues See more
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    Genomic context

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    See BC024063 in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (81919154..81948967)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (82083320..82113133)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10630 Neighboring gene predicted gene, 46195 Neighboring gene zinc finger protein 873 Neighboring gene sorting nexin family member 27 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2330 Neighboring gene STARR-seq mESC enhancer starr_27356 Neighboring gene STARR-positive B cell enhancer ABC_E8351 Neighboring gene expressed sequence AU041133 Neighboring gene STARR-positive B cell enhancer ABC_E10631 Neighboring gene predicted gene, 40720

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC666584

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374033.1 → NP_001360962.1  uncharacterized protein LOC666584 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC158605
      UniProtKB/TrEMBL
      A0A1W2P7G7
      Related
      ENSMUSP00000151688.2, ENSMUST00000220287.2
      Conserved Domains (3) summary
      COG5048
      Location:312 → 736
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:136 → 156
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box

    2. NM_001374035.1 → NP_001360964.1  uncharacterized protein LOC666584 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC158605

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      81919154..81948967
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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