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    C230057M02Rik RIKEN cDNA C230057M02 gene [ Mus musculus (house mouse) ]

    Gene ID: 319463, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C230057M02Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C230057M02 geneprovided by MGI
    Primary source
    MGI:MGI:2442079
    See related
    AllianceGenome:MGI:2442079
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm45898
    Summary
    Is expressed in central nervous system; clavicle; and craniocervical region bone. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 5.8), cortex adult (RPKM 5.6) and 4 other tissues See more
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    Genomic context

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    See C230057M02Rik in Genome Data Viewer
    Location:
    8 E1; 8 71.95 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123451683..123479388, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (122724944..122752650, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 translocation partner 3 Neighboring gene STARR-positive B cell enhancer ABC_E9748 Neighboring gene STARR-positive B cell enhancer ABC_E5048 Neighboring gene predicted gene 10612 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125233759-125233868 Neighboring gene predicted gene, 53467 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125235898-125236081 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125236552-125237022 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125263004-125263205 Neighboring gene RIKEN cDNA A530010L16 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:125299226-125299409 Neighboring gene predicted gene, 39271

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      123451683..123479388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004935131.1 RNA Sequence

    2. XR_004935132.1 RNA Sequence

    3. XR_004935128.1 RNA Sequence

    4. XR_004935137.1 RNA Sequence

    5. XR_004935135.1 RNA Sequence

    6. XR_004935133.1 RNA Sequence

    7. XR_004935123.1 RNA Sequence

    8. XR_004935121.1 RNA Sequence

    9. XR_004935136.1 RNA Sequence

    10. XR_004935117.1 RNA Sequence

    11. XR_004935129.1 RNA Sequence

    12. XR_004935130.1 RNA Sequence

    13. XR_004935124.1 RNA Sequence

    14. XR_004935138.1 RNA Sequence

    15. XR_004935125.1 RNA Sequence

    16. XR_004935134.1 RNA Sequence

    17. XR_004935118.1 RNA Sequence

    18. XR_004935139.1 RNA Sequence

    19. XR_004935120.1 RNA Sequence

    20. XR_004935122.1 RNA Sequence

    21. XR_004935119.1 RNA Sequence

    22. XR_004935126.1 RNA Sequence

    23. XR_004935115.1 RNA Sequence

    24. XR_004935127.1 RNA Sequence

    25. XR_004935116.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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