U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Npvf neuropeptide VF precursor [ Mus musculus (house mouse) ]

    Gene ID: 60531, updated on 9-Dec-2024

    Summary

    Official Symbol
    Npvfprovided by MGI
    Official Full Name
    neuropeptide VF precursorprovided by MGI
    Primary source
    MGI:MGI:1926488
    See related
    Ensembl:ENSMUSG00000029831 AllianceGenome:MGI:1926488
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rfrp
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be involved in negative regulation of gonadotropin secretion and neuropeptide signaling pathway. Predicted to be located in extracellular region. Is expressed in brain; cerebral cortex; dorsomedial hypothalamic nucleus; hypothalamus; and hypothalamus mantle layer. Orthologous to human NPVF (neuropeptide VF precursor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Npvf in Genome Data Viewer
    Location:
    6 B2.3; 6 24.34 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (50627652..50631425, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (50650672..50654445, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene PRP18 pre-mRNA processing factor 18 homolog pseudogene Neighboring gene Crn, crooked neck-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_15853 Neighboring gene predicted gene, 38808 Neighboring gene aurora kinase A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables neuropeptide activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables signaling receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of gonadotropin secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of gonadotropin secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of gonadotropin secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuropeptide signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in neuropeptide signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    pro-FMRFamide-related neuropeptide VF
    Names
    FMRFamide-related peptides
    RFamide-related peptide

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021892.2NP_068692.1  pro-FMRFamide-related neuropeptide VF precursor

      See identical proteins and their annotated locations for NP_068692.1

      Status: VALIDATED

      Source sequence(s)
      AC156399, AK138200
      Consensus CDS
      CCDS20133.1
      UniProtKB/Swiss-Prot
      Q920A4, Q9ESQ8
      UniProtKB/TrEMBL
      Q3UUP8
      Related
      ENSMUSP00000031853.8, ENSMUST00000031853.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      50627652..50631425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)