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    SK19 SKP1-like 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814845, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK19
    Official Full Name
    SKP1-like 19
    Primary source
    TAIR:AT2G03160
    Locus tag
    AT2G03160
    See related
    Araport:AT2G03160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK19; SKP1-like 19; T18E12.17; T18E12_17
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    Genomic context

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    See SK19 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (959645..960247)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene ATP/GTP-binding protein family Neighboring gene uncharacterized protein Neighboring gene SKP1-like 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel F-box protein represses endothecial secondary wall thickening for anther dehiscence in Arabidopsis thaliana. Kim YY, et al. J Plant Physiol, 2012 Jan 15. PMID 22018967
    2. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
    3. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297
    4. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Marrocco K, et al. Plant J, 2006 Feb. PMID 16412087
    5. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 19
    NP_565295.1
    • SKP1-like 19 (SK19); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1397 Blast hits to 1395 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 513; Fungi - 177; Plants - 528; Viruses - 11; Other Eukaryotes - 168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      959645..960247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126367.1 → NP_565295.1  SKP1-like 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565295.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81058
      UniProtKB/TrEMBL
      A0A654ERH2
      Conserved Domains (3) summary
      smart00512
      Location:3 → 140
      Skp1; Found in Skp1 protein family
      COG5201
      Location:5 → 187
      SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
      pfam01466
      Location:114 → 187
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81058.1

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