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    RIE1 RING-finger protein for embryogenesi [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814703, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RIE1
    Official Full Name
    RING-finger protein for embryogenesi
    Primary source
    TAIR:AT2G01735
    Locus tag
    AT2G01735
    See related
    Araport:AT2G01735
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RING-finger protein for embryogenesis
    Summary
    encodes a RING-H2 zinc finger protein essential for seed development.
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    Genomic context

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    See RIE1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (324365..326094)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Ribophorin I Neighboring gene cleavage and polyadenylation specificity factor 73 kDa subunit-II Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene microtubule-associated proteins 70-3 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A RING-H2 zinc-finger protein gene RIE1 is essential for seed development in Arabidopsis. Xu R, et al. Plant Mol Biol, 2003 Sep. PMID 14756305
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_179593.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RING-finger protein for embryogenesi
    NP_849924.1
    • RING-finger protein for embryogenesis (RIE1); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1); Has 9688 Blast hits to 9662 proteins in 283 species: Archae - 0; Bacteria - 6; Metazoa - 2533; Fungi - 743; Plants - 5052; Viruses - 40; Other Eukaryotes - 1314 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      324365..326094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335075.1 → NP_001325257.1  RING-finger protein for embryogenesi [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2L5

    2. NM_179593.4 → NP_849924.1  RING-finger protein for embryogenesi [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849924.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GUU2
      UniProtKB/TrEMBL
      A0A654ER48
      Conserved Domains (1) summary
      pfam13639
      Location:306 → 348
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUU2.1

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