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    zinc finger (Ran-binding) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816309, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc finger (Ran-binding) family protein
    Primary source
    TAIR:AT2G17975
    Locus tag
    AT2G17975
    See related
    Araport:AT2G17975
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27K22.20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (7822074..7824121, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene polyamine-modulated factor 1-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Novel RNA-Binding Protein Involves ABA Signaling by Post-transcriptionally Repressing ABI2. Xu J, et al. Front Plant Sci, 2017. PMID 28174577, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335574.1
    NM_127353.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within 3'-UTR-mediated mRNA stabilization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger (Ran-binding) family protein
    NP_179388.1
    • zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT2G26695.1); Has 1281 Blast hits to 744 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 88; Plants - 606; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7822074..7824121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127353.3 → NP_179388.1  zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179388.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WYV9, A0A654EV36, Q8S8K1
      Conserved Domains (3) summary
      smart00547
      Location:50 → 74
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:9 → 28
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:228 → 255
      zf-RanBP; Zn-finger in Ran binding protein and others

    2. NM_001335574.1 → NP_001323512.1  zinc finger (Ran-binding) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXB9
    Nucleotide Protein
    Heading Accession and Version

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