U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    polyamine-modulated factor 1-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816311, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    polyamine-modulated factor 1-binding protein
    Primary source
    TAIR:AT2G17990
    Locus tag
    AT2G17990
    See related
    Araport:AT2G17990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27K22.14; T27K22_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7826811..7828827)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene TBP-associated factor 14 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtCAP2 is crucial for lytic vacuole biogenesis during germination by positively regulating vacuolar protein trafficking. Kwon Y, et al. Proc Natl Acad Sci U S A, 2018 Feb 13. PMID 29378957, Free PMC Article
    2. Nucleoporin MOS7/Nup88 is required for mitosis in gametogenesis and seed development in Arabidopsis. Park GT, et al. Proc Natl Acad Sci U S A, 2014 Dec 23. PMID 25489100, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001335576.1
    NM_127355.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lytic vacuole organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative gravitropism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to red or far red light IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vacuolar transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with late endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyamine-modulated factor 1-binding protein
    NP_179390.1
    • BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7826811..7828827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335575.1 → NP_001325320.1  polyamine-modulated factor 1-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVS6, A0A1P8B2U2

    2. NM_127355.3 → NP_179390.1  polyamine-modulated factor 1-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179390.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVS6, A0A654ETT0, Q9SL47
      Conserved Domains (1) summary
      TIGR02169
      Location:150 → 326
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    3. NM_001335576.1 → NP_001325319.1  polyamine-modulated factor 1-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VVS6, A0A1P8B2T5, A0A5S9WZ79
      Conserved Domains (1) summary
      TIGR02169
      Location:160 → 336
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.