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    lumazine-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816597, updated on 18-Sep-2024

    Summary

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    Official Full Name
    lumazine-binding family protein
    Primary source
    TAIR:AT2G20690
    Locus tag
    AT2G20690
    See related
    Araport:AT2G20690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5H14.34; F5H14_34
    Summary
    A synthetic gene encoding the catalytic domain of the Arabidopsis thaliana gene At2g20690 was recombinant expressed in E. coli demonstrating the molecular function of riboflavin synthase.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (8923305..8924974)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sugar phosphate exchanger, putative (DUF506) Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene LORELEI-LIKE-GPI ANCHORED PROTEIN 2 Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of vitamin B2 biosynthesis: riboflavin synthase of Arabidopsis thaliana and its inhibition by riboflavin. Fischer M, et al. Biol Chem, 2005 May. PMID 15927885
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_127633.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables riboflavin synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within riboflavin biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    lumazine-binding family protein
    NP_565482.1
    • lumazine-binding family protein; FUNCTIONS IN: binding, riboflavin synthase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Lumazine-binding protein (InterPro:IPR001783); Has 6777 Blast hits to 6682 proteins in 2207 species: Archae - 44; Bacteria - 4232; Metazoa - 1; Fungi - 143; Plants - 41; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8923305..8924974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127633.3 → NP_565482.1  lumazine-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565482.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VRA2, Q9ASX1, Q9SKU8
      Conserved Domains (2) summary
      PLN02741
      Location:64 → 257
      PLN02741; riboflavin synthase
      cd00402
      Location:65 → 251
      Riboflavin_synthase_like; Riboflavin synthase and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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