U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816800, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    zinc ion binding protein
    Primary source
    TAIR:AT2G22690
    Locus tag
    AT2G22690
    See related
    Araport:AT2G22690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9I22.13; T9I22_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (9649690..9651574, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene indoleacetic acid-induced protein 8 Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene pseudo Neighboring gene SPT2 chromatin protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036320.1
    NM_127834.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc ion binding protein
    NP_001031397.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565541.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 761 Blast hits to 757 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 327; Fungi - 206; Plants - 137; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9649690..9651574 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127834.3 → NP_565541.1  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565541.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0E6, A0A654EV57, Q9ZQ45
      Conserved Domains (4) summary
      smart00668
      Location:144 → 200
      CTLH; C-terminal to LisH motif
      smart00757
      Location:196 → 292
      CRA; CT11-RanBPM
      COG5109
      Location:20 → 381
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13445
      Location:324 → 365
      zf-RING_UBOX; RING-type zinc-finger

    2. NM_001036320.1 → NP_001031397.1  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X0E6, A0A654EV57, Q9ZQ45
      Conserved Domains (4) summary
      smart00668
      Location:144 → 200
      CTLH; C-terminal to LisH motif
      smart00757
      Location:196 → 292
      CRA; CT11-RanBPM
      COG5109
      Location:20 → 381
      COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      pfam13445
      Location:324 → 365
      zf-RING_UBOX; RING-type zinc-finger
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools