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    ATG18G autophagy 18 G-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838702, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG18G
    Official Full Name
    autophagy 18 G-like protein
    Primary source
    TAIR:AT1G03380
    Locus tag
    AT1G03380
    See related
    Araport:AT1G03380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATATG18G; F21B7.1; homolog of yeast autophagy 18 (ATG18) G
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    Genomic context

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    See ATG18G in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (835767..841373)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene C2 calcium/lipid-binding and GRAM domain containing protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene uncharacterized protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana. Xiong Y, et al. Plant J, 2005 May. PMID 15860012
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_100220.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy 18 G-like protein
    NP_171837.7
    • homolog of yeast autophagy 18 (ATG18) G (ATG18G); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) H (TAIR:AT1G54710.1); Has 888 Blast hits to 884 proteins in 197 species: Archae - 0; Bacteria - 6; Metazoa - 334; Fungi - 309; Plants - 178; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      835767..841373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100220.8 → NP_171837.7  autophagy 18 G-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171837.7

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56W94, Q8GUL1, Q9LR84, Q9ZVU0
      UniProtKB/TrEMBL
      A0A178W5N1, A0A5S9SDW3
      Conserved Domains (3) summary
      smart00320
      Location:367 → 397
      WD40; WD40 repeats
      sd00039
      Location:381 → 417
      7WD40; WD40 repeat [structural motif]
      pfam12490
      Location:512 → 748
      BCAS3; Breast carcinoma amplified sequence 3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GUL1.1

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