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    Zinc-binding dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842867, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc-binding dehydrogenase family protein
    Primary source
    TAIR:AT1G65560
    Locus tag
    AT1G65560
    See related
    Araport:AT1G65560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5I14.9; F5I14_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (24371387..24373823, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LETM1-like protein Neighboring gene uncharacterized protein Neighboring gene Xanthine/uracil permease family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334215.1
    NM_105230.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Zinc-binding dehydrogenase family protein
    NP_176734.1
    • Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 16645 Blast hits to 16624 proteins in 1782 species: Archae - 118; Bacteria - 9540; Metazoa - 863; Fungi - 1044; Plants - 588; Viruses - 0; Other Eukaryotes - 4492 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24371387..24373823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105230.5 → NP_176734.1  Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176734.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WSG4, A0A654ELB2, F4IBH8
      Conserved Domains (2) summary
      cd08295
      Location:7 → 347
      double_bond_reductase_like; Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase
      PLN03154
      Location:1 → 350
      PLN03154; putative allyl alcohol dehydrogenase; Provisional

    2. NM_001334215.1 → NP_001322310.1  Zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEY6, A0A1P8ATL5
    Nucleotide Protein
    Heading Accession and Version

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