U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nucleolin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842817, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    nucleolin
    Primary source
    TAIR:AT1G65090
    Locus tag
    AT1G65090
    See related
    Araport:AT1G65090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (24180830..24183300, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 4-coumarate:CoA ligase 3 Neighboring gene DNA mismatch repair protein MutS, type 2 Neighboring gene Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene SCR-like 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SEED LIPID DROPLET PROTEIN1, SEED LIPID DROPLET PROTEIN2, and LIPID DROPLET PLASMA MEMBRANE ADAPTOR mediate lipid droplet-plasma membrane tethering. Krawczyk HE, et al. Plant Cell, 2022 May 24. PMID 35348751, Free PMC Article
    2. Identification of Low-Abundance Lipid Droplet Proteins in Seeds and Seedlings. Kretzschmar FK, et al. Plant Physiol, 2020 Mar. PMID 31826923, Free PMC Article
    3. Ubiquitin-Mediated Proteasomal Degradation of Oleosins is Involved in Oil Body Mobilization During Post-Germinative Seedling Growth in Arabidopsis. Deruyffelaere C, et al. Plant Cell Physiol, 2015 Jul. PMID 25907570
    4. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001160975.1
    NM_001198387.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleolin
    NP_001154447.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.1); Has 1234 Blast hits to 904 proteins in 178 species: Archae - 0; Bacteria - 58; Metazoa - 431; Fungi - 95; Plants - 83; Viruses - 38; Other Eukaryotes - 529 (source: NCBI BLink).
    NP_001185316.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.1).
    NP_176689.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits to 1033 proteins in 192 species: Archae - 0; Bacteria - 61; Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42; Other Eukaryotes - 598 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24180830..24183300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105183.4 → NP_176689.2  nucleolin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176689.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q680C1, Q84WS6
      Conserved Domains (1) summary
      PTZ00121
      Location:114 → 210
      PTZ00121; MAEBL; Provisional

    2. NM_001160975.1 → NP_001154447.1  nucleolin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154447.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WS15, F4I9U3
      Conserved Domains (1) summary
      PTZ00121
      Location:89 → 210
      PTZ00121; MAEBL; Provisional

    3. NM_001198387.1 → NP_001185316.1  nucleolin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185316.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WS15, F4I9U2
      Conserved Domains (1) summary
      PTZ00121
      Location:114 → 210
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.