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    endonuclease/exonuclease/phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837726, updated on 18-Sep-2024

    Summary

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    Official Full Name
    endonuclease/exonuclease/phosphatase family protein
    Primary source
    TAIR:AT1G11800
    Locus tag
    AT1G11800
    See related
    Araport:AT1G11800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25C20.3; F25C20_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3985184..3987290, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAD-binding Berberine family protein Neighboring gene ncRNA Neighboring gene oxidoreductase, 2OG-Fe(II) oxygenase family protein Neighboring gene uncharacterized protein Neighboring gene arogenate dehydratase 1 Neighboring gene miscRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101052.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    endonuclease/exonuclease/phosphatase family protein
    NP_563894.2
    • endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Zinc finger, RanBP2-type (InterPro:IPR001876); Has 386 Blast hits to 366 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 170; Fungi - 14; Plants - 104; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3985184..3987290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101052.3 → NP_563894.2  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563894.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD42, Q9SA95
      Conserved Domains (3) summary
      cd09080
      Location:173 → 438
      TDP2; Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains
      smart00547
      Location:65 → 88
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:20 → 40
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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