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    NdhL inorganic carbon transport protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843413, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NdhL
    Official Full Name
    inorganic carbon transport protein-like protein
    Primary source
    TAIR:AT1G70760
    Locus tag
    AT1G70760
    See related
    Araport:AT1G70760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CHLORORESPIRATORY REDUCTION 23; CRR23; F5A18.6; F5A18_6; NADH dehydrogenase-like complex L
    Summary
    a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.
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    Genomic context

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    See NdhL in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (26687202..26688384)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene myosin-binding protein (Protein of unknown function, DUF593) Neighboring gene ncRNA Neighboring gene transmembrane protein (Protein of unknown function DUF2359, transmembrane) Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CRR23/NdhL is a subunit of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Shimizu H, et al. Plant Cell Physiol, 2008 May. PMID 18388109
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105744.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in NADH dehydrogenase complex (plastoquinone) assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photosynthetic electron transport in photosystem I TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of NAD(P)H dehydrogenase complex (plastoquinone) ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    part_of NAD(P)H dehydrogenase complex (plastoquinone) NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inorganic carbon transport protein-like protein
    NP_177233.1
    • CHLORORESPIRATORY REDUCTION 23 (CRR23); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: NAD(P)H dehydrogenase complex (plastoquinone), thylakoid membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit L (InterPro:IPR019654); Has 242 Blast hits to 242 proteins in 68 species: Archae - 0; Bacteria - 134; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26687202..26688384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105744.4 → NP_177233.1  inorganic carbon transport protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177233.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WMK1, Q9CAC5, Q9SSL2
      UniProtKB/TrEMBL
      A0A178W3E4, A0A5S9WTH4
      Conserved Domains (1) summary
      pfam10716
      Location:82 → 157
      NdhL; NADH dehydrogenase transmembrane subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAC5.1

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