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    TAF2 TBP-associated factor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843733, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAF2
    Official Full Name
    TBP-associated factor 2
    Primary source
    TAIR:AT1G73960
    Locus tag
    AT1G73960
    See related
    Araport:AT1G73960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2P9.17; F2P9_17; TBP-associated factor 2
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    Genomic context

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    See TAF2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Sequence:
    Chromosome: 1; NC_003070.9 (27804879..27814519, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor family protein Neighboring gene Transmembrane Fragile-X-F-associated protein Neighboring gene obscurin-like protein Neighboring gene CLAVATA3/ESR-RELATED 13 Neighboring gene Phosphoribulokinase / Uridine kinase family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334615.1
    NM_001334616.1
    NM_106055.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TBP-associated factor 2
    NP_001319379.1
    • TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_177536.2
    • TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 6967 Blast hits to 5425 proteins in 796 species: Archae - 100; Bacteria - 1288; Metazoa - 2650; Fungi - 808; Plants - 323; Viruses - 9; Other Eukaryotes - 1789 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27804879..27814519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106055.5 → NP_177536.2  TBP-associated factor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177536.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HTS1, Q6SJQ9, Q8LPF0, Q9C9B7
      UniProtKB/TrEMBL
      A0A178W547
      Conserved Domains (1) summary
      cd09839
      Location:24 → 527
      M1_TAF2; TATA binding protein (TBP) associated factor 2

    2. NM_001334615.1 → NP_001319379.1  TBP-associated factor 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4F6, A0A2H1ZEF1

    3. NM_001334616.1 → NP_001320977.1  TBP-associated factor 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W547, A0A1P8API4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPF0.1

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