D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
Primary source: TAIR:AT3G05190
Locus tag: AT3G05190
See related: Araport:AT3G05190
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T12H1.16; T12H1_16
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 21

Sequence:: Chromosome: 3; NC_003074.8 (1471083..1475832)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001337569.1

Supported by ESTs:

NM_001337570.1

Supported by ESTs:

NM_111392.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables catalytic activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

NP_001319477.1

D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT5G27410.2); Has 12987 Blast hits to 12984 proteins in 2156 species: Archae - 154; Bacteria - 7776; Metazoa - 19; Fungi - 96; Plants - 317; Viruses - 0; Other Eukaryotes - 4625 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

1471083..1475832

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001337569.1 → NP_001319477.1 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8W0Z7, Q9MAA0

UniProtKB/TrEMBL

A0A178VG19, A0A5S9X977, A0A7G2ELC6

Conserved Domains (1) summary

cd01558
Location:265 → 538

D-AAT_like; D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and ...
NM_001337570.1 → NP_001326039.1 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8W0Z7, Q9MAA0

UniProtKB/TrEMBL

A0A178VG19, A0A5S9X977, A0A7G2ELC6

Conserved Domains (1) summary

cd01558
Location:265 → 538

D-AAT_like; D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and ...
NM_111392.4 → NP_187170.2 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_187170.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8W0Z7, Q9MAA0

UniProtKB/TrEMBL

A0A178VG19, A0A5S9X977, A0A7G2ELC6

Conserved Domains (1) summary

cd01558
Location:265 → 538

D-AAT_like; D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and ...