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    Cyclin/Brf1-like TBP-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820092, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cyclin/Brf1-like TBP-binding protein
    Primary source
    TAIR:AT3G09360
    Locus tag
    AT3G09360
    See related
    Araport:AT3G09360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (2873412..2878591)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene Fes1A Neighboring gene myb domain protein 3r-3 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Double mutation of BRF1 and BRF2 leads to sterility in Arabidopsis thaliana. Zhang K, et al. Biochem Biophys Res Commun, 2019 Aug 27. PMID 31277948
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001337812.1
    NM_001337813.1
    NM_111770.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microgametogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cyclin/Brf1-like TBP-binding protein
    NP_187547.2
    • Cyclin/Brf1-like TBP-binding protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT2G45100.1); Has 20615 Blast hits to 13314 proteins in 1023 species: Archae - 483; Bacteria - 1191; Metazoa - 7169; Fungi - 2226; Plants - 882; Viruses - 261; Other Eukaryotes - 8403 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2873412..2878591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111770.3 → NP_187547.2  Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187547.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V635, A0A5S9XAN3, Q0WVQ3
      Conserved Domains (3) summary
      COG1405
      Location:63 → 270
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
      pfam07741
      Location:400 → 521
      BRF1; Brf1-like TBP-binding domain
      cd20554
      Location:172 → 263
      CYCLIN_TFIIIB90_rpt2; second cyclin box found in transcription factor IIIB 90 kDa subunit (TFIIIB90) and similar proteins

    2. NM_001337812.1 → NP_001326224.1  Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V635, A0A1I9LNM0
      Conserved Domains (3) summary
      COG1405
      Location:65 → 270
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
      pfam07741
      Location:400 → 521
      BRF1; Brf1-like TBP-binding domain
      cd20554
      Location:172 → 263
      CYCLIN_TFIIIB90_rpt2; second cyclin box found in transcription factor IIIB 90 kDa subunit (TFIIIB90) and similar proteins

    3. NM_001337813.1 → NP_001326225.1  Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V635, A0A5S9XAN3, Q0WVQ3
      Conserved Domains (3) summary
      COG1405
      Location:63 → 270
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
      pfam07741
      Location:400 → 521
      BRF1; Brf1-like TBP-binding domain
      cd20554
      Location:172 → 263
      CYCLIN_TFIIIB90_rpt2; second cyclin box found in transcription factor IIIB 90 kDa subunit (TFIIIB90) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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