U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820112, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT3G09550
    Locus tag
    AT3G09550
    See related
    Araport:AT3G09550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2931101..2934365)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein H4 Neighboring gene exocyst subunit exo70 family protein H3 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Lipin family protein Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001337825.1
    NM_001337826.1
    NM_111789.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ankyrin repeat family protein
    NP_001319511.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G12360.1); Has 55803 Blast hits to 24932 proteins in 1099 species: Archae - 58; Bacteria - 5470; Metazoa - 27318; Fungi - 5824; Plants - 4263; Viruses - 331; Other Eukaryotes - 12539 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2931101..2934365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337825.1 → NP_001319511.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFW4, A0A384KPI6, A0A5S9XAQ2, F4J181
      Conserved Domains (4) summary
      PTZ00322
      Location:296 → 389
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      sd00045
      Location:245 → 277
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:182 → 269
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:428 → 533
      PGG; Domain of unknown function

    2. NM_001337826.1 → NP_001325606.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLR6, A0A5S9XAQ2

    3. NM_111789.7 → NP_187566.4  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187566.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFW4, A0A384KPI6, A0A5S9XAQ2, F4J181
      Conserved Domains (4) summary
      PTZ00322
      Location:296 → 389
      PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
      sd00045
      Location:245 → 277
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:182 → 269
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:428 → 533
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.