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    alanine-tRNA ligase, putative (DUF760) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821048, updated on 18-Sep-2024

    Summary

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    Official Full Name
    alanine-tRNA ligase, putative (DUF760)
    Primary source
    TAIR:AT3G17800
    Locus tag
    AT3G17800
    See related
    Araport:AT3G17800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (6091110..6093151, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Dihydroxyacetone kinase Neighboring gene B-cell receptor-associated-like protein Neighboring gene purple acid phosphatase 17 Neighboring gene ncRNA Neighboring gene pyrimidine 1 Neighboring gene glutamine synthetase 1.3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent gene expression in Arabidopsis. Kalbina I, et al. Plant Cell Environ, 2006 Sep. PMID 16913867
    2. Gene regulation by low level UV-B radiation: identification by DNA array analysis. Brosché M, et al. Photochem Photobiol Sci, 2002 Sep. PMID 12665302
    3. Ultraviolet-B signalling: Arabidopsis brassinosteroid mutants are defective in UV-B regulated defence gene expression. Sävenstrand H, et al. Plant Physiol Biochem, 2004 Sep. PMID 15474373
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084704.1
    NM_112661.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to UV-B IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to UV-B IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV-B IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to ozone IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		  

    General protein information

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    Preferred Names
    alanine-tRNA ligase, putative (DUF760)
    NP_001078173.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 158 Blast hits to 158 proteins in 33 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    NP_566588.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT1G48450.1); Has 157 Blast hits to 157 proteins in 32 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6091110..6093151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112661.3 → NP_566588.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566588.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J6F0, Q0WNF6, Q56ZA5, Q8W4L9, Q9LVJ0
      UniProtKB/TrEMBL
      A0A178V9J5, A0A7G2EJB6
      Conserved Domains (1) summary
      pfam05542
      Location:203 → 274
      DUF760; Protein of unknown function (DUF760)

    2. NM_001084704.1 → NP_001078173.1  alanine-tRNA ligase, putative (DUF760) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078173.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9J5, A0A7G2EJB6
      Conserved Domains (1) summary
      pfam05542
      Location:209 → 280
      DUF760; Protein of unknown function (DUF760)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVJ0.1

    Gene LinkOut

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