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    SH3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840034, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SH3 domain-containing protein
    Primary source
    TAIR:AT1G31440
    Locus tag
    AT1G31440
    See related
    Araport:AT1G31440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8E3.10; T8E3_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (11255836..11258814, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene putrescine-binding periplasmic protein-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene vitellogenin-2 protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Lam BC, et al. Plant Cell, 2001 Nov. PMID 11701884, Free PMC Article
    2. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102883.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables clathrin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SH3 domain-containing protein
    NP_174429.1
    • SH3 domain-containing protein; FUNCTIONS IN: clathrin binding; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G34660.1); Has 3264 Blast hits to 2883 proteins in 317 species: Archae - 14; Bacteria - 271; Metazoa - 1747; Fungi - 174; Plants - 243; Viruses - 12; Other Eukaryotes - 803 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11255836..11258814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102883.5 → NP_174429.1  SH3 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174429.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C865
      UniProtKB/TrEMBL
      A0A178W7G6, A0A5S9WJZ1, A0A654EG47
      Conserved Domains (2) summary
      cd07607
      Location:45 → 253
      BAR_SH3P_plant; The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins
      cl17036
      Location:370 → 422
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C865.1

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