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    FRS7 FAR1-related sequence 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819799, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FRS7
    Official Full Name
    FAR1-related sequence 7
    Primary source
    TAIR:AT3G06250
    Locus tag
    AT3G06250
    See related
    Araport:AT3G06250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28L1.19; F28L1_19; FAR1-related sequence 7
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    Genomic context

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    See FRS7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (1888834..1892830, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MAP kinase kinase 8 Neighboring gene F-box family protein Neighboring gene galacturonosyltransferase-like 4 Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes. Fernández-Calvo P, et al. New Phytol, 2020 Aug. PMID 32266972
    2. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Ritter A, et al. Nat Commun, 2017 May 11. PMID 28492275, Free PMC Article
    3. Chromatin attachment to the nuclear matrix represses hypocotyl elongation in Arabidopsis thaliana. Xu L, et al. Nat Commun, 2024 Feb 12. PMID 38346986, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes.
      Title: FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes.
    2. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
      Title: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_111500.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FAR1-related sequence 7
    NP_566278.1
    • FAR1-related sequence 7 (FRS7); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 12 (TAIR:AT5G18960.1); Has 2099 Blast hits to 1278 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 21; Plants - 2069; Viruses - 2; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1888834..1892830 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337643.1 → NP_001325737.1  FAR1-related sequence 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8J3
      UniProtKB/TrEMBL
      A0A178VME0, A0A7G2EGB8
      Conserved Domains (2) summary
      PLN03097
      Location:189 → 755
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      cl40636
      Location:42 → 116
      FAR1; FAR1 DNA-binding domain

    2. NM_001337642.1 → NP_001325738.1  FAR1-related sequence 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8J3
      UniProtKB/TrEMBL
      A0A178VME0, A0A7G2EGB8
      Conserved Domains (2) summary
      PLN03097
      Location:189 → 755
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      cl40636
      Location:42 → 116
      FAR1; FAR1 DNA-binding domain

    3. NM_111500.3 → NP_566278.1  FAR1-related sequence 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566278.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8J3
      UniProtKB/TrEMBL
      A0A178VME0, A0A7G2EGB8
      Conserved Domains (2) summary
      PLN03097
      Location:189 → 755
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      cl40636
      Location:42 → 116
      FAR1; FAR1 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M8J3.1

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