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    PSF2 PSF2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820432, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSF2
    Official Full Name
    PSF2
    Primary source
    TAIR:AT3G12530
    Locus tag
    AT3G12530
    See related
    Araport:AT3G12530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See PSF2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (3972180..3974440, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MADS-box family protein Neighboring gene ncRNA Neighboring gene sulfate transporter 4;2 Neighboring gene ncRNA Neighboring gene ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene XH/XS domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035603.1
    NM_001337995.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PSF2
    NP_001030680.1
    • PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319531.1
    • PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 396 Blast hits to 382 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 167; Plants - 52; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3972180..3974440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112088.3 → NP_187859.2  PSF2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187859.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5EAG9, Q9C7A8, Q9LHF6
      UniProtKB/TrEMBL
      A0A178VED3, A0A7G2ENF2
      Conserved Domains (2) summary
      cd11712
      Location:66 → 181
      GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
      cd21694
      Location:13 → 74
      GINS_B_Psf2; beta-strand (B) domain of GINS complex protein Psf2

    2. NM_001337996.1 → NP_001326331.1  PSF2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNY4

    3. NM_001337995.1 → NP_001319531.1  PSF2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5EAG9, Q9C7A8, Q9LHF6
      UniProtKB/TrEMBL
      A0A178VED3, A0A7G2ENF2
      Conserved Domains (2) summary
      cd11712
      Location:66 → 181
      GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
      cd21694
      Location:13 → 74
      GINS_B_Psf2; beta-strand (B) domain of GINS complex protein Psf2

    4. NM_001035603.1 → NP_001030680.1  PSF2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ENF2, F4J9T0
      Conserved Domains (1) summary
      cd11712
      Location:47 → 162
      GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7A8.2

    Gene LinkOut

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