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    DEA(D/H)-box RNA helicase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841287, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DEA(D/H)-box RNA helicase family protein
    Primary source
    TAIR:AT1G48650
    Locus tag
    AT1G48650
    See related
    Araport:AT1G48650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I4.16; F11I4_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    19
    Sequence:
    Chromosome: 1; NC_003070.9 (17989131..17995339, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene receptor for activated C kinase 1B Neighboring gene peroxin 3 Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene auxin-responsive GH3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160939.1
    NM_103761.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEA(D/H)-box RNA helicase family protein
    NP_001154411.1
    • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 12982 Blast hits to 8882 proteins in 1499 species: Archae - 14; Bacteria - 5361; Metazoa - 2913; Fungi - 1651; Plants - 997; Viruses - 50; Other Eukaryotes - 1996 (source: NCBI BLink).
    NP_175298.2
    • DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 12828 Blast hits to 8781 proteins in 1491 species: Archae - 14; Bacteria - 5237; Metazoa - 2858; Fungi - 1715; Plants - 974; Viruses - 58; Other Eukaryotes - 1972 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17989131..17995339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103761.6 → NP_175298.2  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175298.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HYJ7, Q9C734
      UniProtKB/TrEMBL
      A0A5S9WK51, A0A654EGP2
      Conserved Domains (6) summary
      smart00847
      Location:768 → 851
      HA2; Helicase associated domain (HA2) Add an annotation
      COG1643
      Location:276 → 1127
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd00046
      Location:316 → 458
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00035
      Location:1102 → 1163
      dsrm; Double-stranded RNA binding motif
      pfam00271
      Location:567 → 660
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:888 → 998
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    2. NM_001160939.1 → NP_001154411.1  DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154411.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WK51, A0A654EGP2, F4HYJ6
      Conserved Domains (6) summary
      smart00847
      Location:768 → 851
      HA2; Helicase associated domain (HA2) Add an annotation
      COG1643
      Location:276 → 1127
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd00046
      Location:316 → 458
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00035
      Location:1102 → 1163
      dsrm; Double-stranded RNA binding motif
      pfam00271
      Location:567 → 660
      Helicase_C; Helicase conserved C-terminal domain
      pfam07717
      Location:888 → 998
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HYJ7.1

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