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    PUM8 pumilio 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838829, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM8
    Official Full Name
    pumilio 8
    Primary source
    TAIR:AT1G22240
    Locus tag
    AT1G22240
    See related
    Araport:AT1G22240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM8; F16L1.3; F16L1_3; pumilio 8
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (7852904..7855213)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene nucleolar GTP-binding protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Myosin heavy chain-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. Tam PP, et al. BMC Plant Biol, 2010 Mar 9. PMID 20214804, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio 8
    NP_173643.1
    • pumilio 8 (PUM8); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 2896 Blast hits to 1722 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 700; Fungi - 827; Plants - 762; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7852904..7855213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102074.2 → NP_173643.1  pumilio 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173643.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LM20
      UniProtKB/TrEMBL
      A0A5S9VLR1, A0A654ECW3, A0A7G2DVH1
      Conserved Domains (1) summary
      cd07920
      Location:201 → 510
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LM20.2

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