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    VAL3 VP1/ABI3-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828240, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VAL3
    Official Full Name
    VP1/ABI3-like 3
    Primary source
    TAIR:AT4G21550
    Locus tag
    AT4G21550
    See related
    Araport:AT4G21550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18E5.170; F18E5_170; VP1/ABI3-like 3
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    Genomic context

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    See VAL3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (11462969..11468679)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Diacylglycerol kinase family protein Neighboring gene sphingosine kinase 1 Neighboring gene ncRNA Neighboring gene vacuolar protein sorting-associated protein-like protein Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene endonuclease 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes. Suzuki M, et al. Plant Physiol, 2007 Feb. PMID 17158584, Free PMC Article
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341497.1
    NM_001341498.1
    NM_118275.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    VP1/ABI3-like 3
    NP_001320023.1
    • VP1/ABI3-like 3 (VAL3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 886 Blast hits to 853 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 879; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11462969..11468679
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341497.1 → NP_001320023.1  VP1/ABI3-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JJK2, O65420, Q9SVT6
      UniProtKB/TrEMBL
      A0A2H1ZEP1

    2. NM_001341498.1 → NP_001329314.1  VP1/ABI3-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7B2

    3. NM_118275.4 → NP_193886.3  VP1/ABI3-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7B8
    Nucleotide Protein
    Heading Accession and Version

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