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    Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830683, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat protein kinase family protein
    Primary source
    TAIR:AT5G01950
    Locus tag
    AT5G01950
    See related
    Araport:AT5G01950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20L15.220; T20L15_220
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    20
    Sequence:
    Chromosome: 5; NC_003076.8 (364902..370295, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene eukaryotic translation initiation factor 2B family protein / eIF-2B family protein Neighboring gene RING/U-box superfamily protein Neighboring gene heat-inducible transcription repressor Neighboring gene RING/U-box superfamily protein Neighboring gene Auxin efflux carrier family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342629.1
    NM_001342630.1
    NM_001342631.1
    NM_001342632.1
    NM_001342633.1
    NM_001342634.1
    NM_001342635.1
    NM_120273.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat protein kinase family protein
    NP_195815.3
    • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G06840.1); Has 195622 Blast hits to 137374 proteins in 5075 species: Archae - 144; Bacteria - 18537; Metazoa - 60927; Fungi - 10261; Plants - 82888; Viruses - 345; Other Eukaryotes - 22520 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      364902..370295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120273.4 → NP_195815.3  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195815.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXG3, F4KAX4
      Conserved Domains (4) summary
      PLN00113
      Location:83 → 902
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:632 → 898
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain

    2. NM_001342632.1 → NP_001330429.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAS1
      Conserved Domains (3) summary
      PLN00113
      Location:29 → 395
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      cl21453
      Location:632 → 717
      PKc_like; Protein Kinases, catalytic domain

    3. NM_001342629.1 → NP_001330434.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAU6, A0A654FXG3
      Conserved Domains (3) summary
      PLN00113
      Location:5 → 817
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:547 → 813
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:19 → 42
      LRR_RI; leucine-rich repeat [structural motif]

    4. NM_001342631.1 → NP_001330430.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXG3, F4KAX4
      Conserved Domains (4) summary
      PLN00113
      Location:83 → 902
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:632 → 898
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain

    5. NM_001342633.1 → NP_001330432.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAT2, A0A654FXG3

    6. NM_001342634.1 → NP_001330431.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAT4, A0A654FXG3
      Conserved Domains (4) summary
      PLN00113
      Location:83 → 907
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:632 → 903
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain

    7. NM_001342630.1 → NP_001330433.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXG3, F4KAX4
      Conserved Domains (4) summary
      PLN00113
      Location:83 → 902
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:632 → 898
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain

    8. NM_001342635.1 → NP_001330428.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FXG3, F4KAX4
      Conserved Domains (4) summary
      PLN00113
      Location:83 → 902
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:632 → 898
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:81 → 103
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:29 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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