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    MYB56 myb domain protein 56 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831648, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYB56
    Official Full Name
    myb domain protein 56
    Primary source
    TAIR:AT5G17800
    Locus tag
    AT5G17800
    See related
    Araport:AT5G17800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMYB56; BRASSINOSTEROIDS AT VASCULAR AND ORGANIZING CENTER; BRAVO; MVA3.150; MVA3_150; myb domain protein 56
    Summary
    Member of the R2R3 factor gene family that acts as a cell-specific repressor of quiescent center (QC) divisions in the primary root, acting through the BR signaling pathway. Works with BES1 to regulate QC division in the root.
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    Genomic context

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    See MYB56 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5877113..5879331)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc finger (Ran-binding) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene WUSCHEL related homeobox 12 Neighboring gene Peroxidase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana. Zhang Y, et al. J Integr Plant Biol, 2013 Nov. PMID 23911125
    2. Regulation of plant stem cell quiescence by a brassinosteroid signaling module. Vilarrasa-Blasi J, et al. Dev Cell, 2014 Jul 14. PMID 24981610
    3. Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases. Chen L, et al. Mol Plant, 2014 Oct 24. PMID 25343985
    4. Identification of Arabidopsis MYB56 as a novel substrate for CRL3(BPM) E3 ligases. Chen L, et al. Mol Plant, 2015 Feb. PMID 25618823
    5. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYB56 represents an unknown pathway for positively controlling the seed size.
      Title: MYB56 encoding a R2R3 MYB transcription factor regulates seed size in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121786.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to brassinosteroid stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in endothelial cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in integument development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of long-day photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in quiescent center organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of seed growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb domain protein 56
    NP_197282.1
    • myb domain protein 56 (MYB56); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5877113..5879331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121786.4 → NP_197282.1  myb domain protein 56 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197282.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6R053, Q9FN72, Q9ZTD6
      UniProtKB/TrEMBL
      A0A5S9Y5W0
      Conserved Domains (1) summary
      cl28544
      Location:93 → 219
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R053.1

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