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    FBD / Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832323, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD / Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT5G22600
    Locus tag
    AT5G22600
    See related
    Araport:AT5G22600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDJ22.2; MDJ22_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (7509843..7511788)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Stress responsive A/B Barrel Domain-containing protein Neighboring gene Leucine Rich Repeat protein family Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene phosphoglycerate/bisphosphoglycerate mutase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001343740.1
    NM_122166.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    FBD / Leucine Rich Repeat domains containing protein
    NP_001318619.1
    • FBD / Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22610.1); Has 687 Blast hits to 669 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 677; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7509843..7511788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343740.1 → NP_001318619.1  FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PDU4
      Conserved Domains (3) summary
      smart00579
      Location:250 → 321
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:11 → 31
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:32 → 56
      LRR_2; Leucine Rich Repeat

    2. NM_122166.4 → NP_197652.2  FBD / Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197652.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q1PDU4
      Conserved Domains (3) summary
      smart00579
      Location:250 → 321
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:11 → 31
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:32 → 56
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version

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