U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    transcription elongation factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834644, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    transcription elongation factor-like protein
    Primary source
    TAIR:AT5G46030
    Locus tag
    AT5G46030
    See related
    Araport:AT5G46030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCL19.8; MCL19_8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (18670051..18671461)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 28 kDa heat/acid-stable phosphoprotein-like protein Neighboring gene Ras-related small GTP-binding family protein Neighboring gene Major facilitator superfamily protein Neighboring gene peptide transporter 3 Neighboring gene spastin, putative (Protein of unknown function, DUF599)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Elongation factor 1 is a component of the Arabidopsis RNA polymerase II elongation complex and associates with a subset of transcribed genes. Markusch H, et al. New Phytol, 2023 Apr. PMID 36627730
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Elongation factor 1 is a component of the Arabidopsis RNA polymerase II elongation complex and associates with a subset of transcribed genes.
      Title: Elongation factor 1 is a component of the Arabidopsis RNA polymerase II elongation complex and associates with a subset of transcribed genes.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001344654.1
    NM_001344655.1
    NM_123971.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription elongation factor-like protein
    NP_568654.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18670051..18671461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123971.3 → NP_568654.1  transcription elongation factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568654.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEF3, Q9FNL9
      UniProtKB/TrEMBL
      A0A5S9YBE7, A0A654G8Y0
      Conserved Domains (1) summary
      pfam05129
      Location:2 → 79
      Elf1; Transcription elongation factor Elf1 like

    2. NM_001344654.1 → NP_001330050.1  transcription elongation factor-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEF3, Q9FNL9
      UniProtKB/TrEMBL
      A0A5S9YBE7, A0A654G8Y0
      Conserved Domains (1) summary
      pfam05129
      Location:2 → 79
      Elf1; Transcription elongation factor Elf1 like

    3. NM_001344655.1 → NP_001330049.1  transcription elongation factor-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEF3, Q9FNL9
      UniProtKB/TrEMBL
      A0A5S9YBE7, A0A654G8Y0
      Conserved Domains (1) summary
      pfam05129
      Location:2 → 79
      Elf1; Transcription elongation factor Elf1 like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LEF3.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools