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    PUM12 pumilio 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835752, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM12
    Official Full Name
    pumilio 12
    Primary source
    TAIR:AT5G56510
    Locus tag
    AT5G56510
    See related
    Araport:AT5G56510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM12; MKN22.2; MKN22_2; pumilio 12; WHITE RUST RESISTANCE 4; WRR4
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (22880687..22884087)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene D-arabinono-1,4-lactone oxidase family protein Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. Tam PP, et al. BMC Plant Biol, 2010 Mar 9. PMID 20214804, Free PMC Article
    2. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001345201.1
    NM_001345203.1
    NM_001345204.1
    NM_001345205.1
    NM_125034.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio 12
    NP_001318812.1
    • pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22880687..22884087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345202.1 → NP_001332601.1  pumilio 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC3
      UniProtKB/TrEMBL
      A0A178UED1, A0A5S9YGX7, A0A654GBK5
      Conserved Domains (1) summary
      cd07920
      Location:264 → 592
      Pumilio; Pumilio-family RNA binding domain

    2. NM_001345201.1 → NP_001318812.1  pumilio 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC3
      UniProtKB/TrEMBL
      A0A178UED1, A0A5S9YGX7, A0A654GBK5
      Conserved Domains (1) summary
      cd07920
      Location:264 → 592
      Pumilio; Pumilio-family RNA binding domain

    3. NM_001345203.1 → NP_001332600.1  pumilio 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC3
      UniProtKB/TrEMBL
      A0A178UED1, A0A5S9YGX7, A0A654GBK5
      Conserved Domains (1) summary
      cd07920
      Location:264 → 592
      Pumilio; Pumilio-family RNA binding domain

    4. NM_001345204.1 → NP_001332599.1  pumilio 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC3
      UniProtKB/TrEMBL
      A0A178UED1, A0A5S9YGX7, A0A654GBK5
      Conserved Domains (1) summary
      cd07920
      Location:264 → 592
      Pumilio; Pumilio-family RNA binding domain

    5. NM_001345205.1 → NP_001332598.1  pumilio 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UED1, A0A1P8BHG0, A0A654GBK5

    6. NM_125034.2 → NP_200462.2  pumilio 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200462.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVC3
      UniProtKB/TrEMBL
      A0A178UED1, A0A5S9YGX7, A0A654GBK5
      Conserved Domains (1) summary
      cd07920
      Location:264 → 592
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVC3.2

    Gene LinkOut

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