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    SAGA-associated factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835971, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SAGA-associated factor-like protein
    Primary source
    TAIR:AT5G58575
    Locus tag
    AT5G58575
    See related
    Araport:AT5G58575
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (23673533..23675643)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Phosphatidate cytidylyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene TOXICOS EN LEVADURA 63 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex. Pfab A, et al. J Mol Biol, 2018 May 11. PMID 29588169
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001345305.1
    NM_125243.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone H2B deubiquitinase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of DUBm complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of SAGA-type complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAGA-associated factor-like protein
    NP_001318831.1
    • CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23673533..23675643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345305.1 → NP_001318831.1  SAGA-associated factor-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BV2
      UniProtKB/TrEMBL
      A0A178UJZ5, A0A5S9YGC5, A0A654GDA7
      Conserved Domains (1) summary
      pfam08209
      Location:89 → 121
      Sgf11; Sgf11 (transcriptional regulation protein)

    2. NM_125243.5 → NP_200665.2  SAGA-associated factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200665.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94BV2
      UniProtKB/TrEMBL
      A0A178UJZ5, A0A5S9YGC5, A0A654GDA7
      Conserved Domains (1) summary
      pfam08209
      Location:89 → 121
      Sgf11; Sgf11 (transcriptional regulation protein)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94BV2.1

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