U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    U2 small nuclear ribonucleoprotein auxiliary factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836522, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    U2 small nuclear ribonucleoprotein auxiliary factor-like protein
    Primary source
    TAIR:AT5G64010
    Locus tag
    AT5G64010
    See related
    Araport:AT5G64010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBM17.11; MBM17_11
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (25618606..25620223, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SAL1 phosphatase-like protein Neighboring gene Inositol monophosphatase family protein Neighboring gene ncRNA Neighboring gene Inositol monophosphatase family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 14 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. SIZ1 deficiency causes reduced stomatal aperture and enhanced drought tolerance via controlling salicylic acid-induced accumulation of reactive oxygen species in Arabidopsis. Miura K, et al. Plant J, 2013 Jan. PMID 22963672
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_125797.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within stomatal closure IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    U2 small nuclear ribonucleoprotein auxiliary factor-like protein
    NP_201206.3
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25618606..25620223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125797.5 → NP_201206.3  U2 small nuclear ribonucleoprotein auxiliary factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201206.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UFV1, A0A654GDS9, F4KC77, Q84WR7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools